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Publications

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Years
Authors
Title
Journal
2025
Lentendu G et al.

EukFunc: A Holistic Eukaryotic Functional Reference for Automated Profiling of Soil Eukaryotes

Molecular Ecology Resources
2024
Porfirio-Sousa et al.

Amoebozoan testate amoebae illuminate the diversity of heterotrophs and the complexity of ecosystems throughout geological time

PNAS
Jung et al.

The symbiotic alga Trebouxia fuels a coherent soil ecosystem on the landscape scale in the Atacama Desert

Environmental Microbiome
Verdon et al.

Can we accurately predict the distribution of soil microorganism presence and relative abundance?

Ecography
Fouet et al.

Unravelling the distribution of three Ammonia species (Foraminifera, Rhizaria) in French Atlantic Coast estuaries using morphological and metabarcoding approaches

Marine Micropaleontology
Bruni et al.

Global distribution modelling of a conspicuous Gondwanian soil protist reveals latitudinal dispersal limitation and range contraction in response to climate warming

Diversity and Distributions
Dumack et al.

It’s time to consider the Arcellinida shell as a weapon

European Journal of Protistology
Marchand et al.

Conception d’itinéraires innovants de couverture du sol sans herbicide en viticulture-réseau on-farm du projet de recherche CV-VigneSol (article 2/2)

Vignes et Vergers
Mota et al.

Conception d’itinéraires innovants de couverture du sol sans herbicides en viticulture - présentation de la parcelle expérimentale on-station du projet CV-VigneSol

Vignes et Vergers
2023
Singer et al.

Unlocking foraminiferal genetic diversity on estuarine mudflats with eDNA metabarcoding

Science of the Total Environment
González-Miguéns et al.

A needle in a haystack: A new metabarcoding  approach to survey diversity at the species level of Arcellinida  (Amoebozoa: Tubulinea)

Molecular Ecology Resources
Velasco-González et al.

Diversity of DNA Sequences from Pathogenic and Potentially Pathogenic  Eukaryotic Microorganisms in Protected Granite Mountain Rocks

Diversity
Brinkmann et al.

Through the eDNA looking glass: Responses of fjord benthic foraminiferal communities to contrasting environmental conditions

Journal of Eukaryotic Microbiology
Seppey et al.

Landscape structure is a key driver of soil protist diversity in meadows in the Swiss Alps

Landscape Ecology
2022
Lara et al.

Discrepancies between prokaryotes and eukaryotes need to be considered in soil DNA-based studies

Environmental Microbiology
Jorissen et al.

The Marine  Influence Index (MII): A Tool to Assess Estuarine Intertidal Mudflat  Environments for the Purpose of Foraminiferal Biomonitoring

Water
Fouet et al.

Foraminiferal Distribution in Two Estuarine Intertidal Mudflats of the French Atlantic Coast: Testing the Marine Influence IndexForaminiferal Distribution in Two Estuarine Intertidal Mudflats of the French Atlantic Coast: Testing the Marine Influence Index

Water
2021
Singer et al.

Protist taxonomic and functional diversity in soil, freshwater and marine ecosystems

Environment International
Mazel et al.

Soil protist function varies with elevation in the Swiss Alps

Environmental Microbiology
Fernández et al.

Niche conservatism drives the elevational diversity gradient in major groups of free‑living soil unicellular eukaryotes

Microbial Ecology
Nasser et al.

Erugomicula, a new genus of Arcellinida (testate lobose amoebae)

Palaeontologia Electronica
Izaguirre et al.

Phylogenetic diversity and dominant ecological traits of freshwater Antarctic Chrysophyceae

Polar Biology
Bengtsson et al.

Environmental drivers of Sphagnum growth in peatlands across the Holarctic region

Journal of Ecology
2020
Singer et al.

High-throughput sequencing of litter and moss eDNA reveals a positive correlation between the diversity of Apicomplexa and their invertebrate hosts across alpine habitats

Soil Biology and Biochemistry
Mod et al.

Greater topoclimatic control of above‐ versus below‐ground communities

Global Change Biology
Marcisz et al.

Testate Amoeba Functional Traits and Their Use in Paleoecology

Frontiers in Ecology and Evolution
Seppey et al.

Soil protist diversity in the Swiss western Alps is better predicted by topo‐climatic than by edaphic variables

Journal of Biogeography
2019
Singer et al.

Dispersal limitations and historical factors determine the biogeography of specialized terrestrial protists

Molecular Ecology
Singer et al.

Contrasted Micro-Eukaryotic Diversity Associated with Sphagnum Mosses in Tropical, Subtropical and Temperate Climatic Zones

Microbial Ecology
Metz et al.

Global distribution of Trebouxiophyceae diversity explored by high‐throughput sequencing and phylogenetic approaches

Environmental microbiology
Velasco-González et al.

Rain-fed granite rock basins accumulate a high diversity of dormant microbial eukaryotes

Microbial Ecology
2018
Singer et al.

Environmental filtering and phylogenetic clustering correlate with the distribution patterns of cryptic protist

Ecology
Duckert et al.

En garde! Redefinition of Nebela militaris (Arcellinida, Hyalospheniidae) and erection of Alabasta gen. nov.

European Journal of Protistology
Geisen et al.

Soil protists: a fertile frontier in soil biology

FEMS Microbiology Reviews
Heděnec et al.

Effect of dry-rewetting stress on response pattern of soil prokaryotic communities in alpine meadow soil

Applied Soil Ecology
Granath et al.

Environmental and taxonomic controls of carbon and oxygen stable isotope composition in Sphagnum across broad climatic and geographic ranges

Biogeosciences
Szelecz et al.

Comparative analysis of bones, mites, soil chemistry, nematodes and soil micro eukaryotic communities of a suspected homicide to estimate a long post mortem interval

Scientific Reports
2017
Geisen et al.

Soil protistology rebooted: 30 fundamental questions to start with

Soil Biology and Biochemistry
Seppey et al.

Distribution patterns of soil microbial eukaryotes suggests widespread algivory by phagotrophic protists as an alternative pathway for nutrient cycling

Soil Biology and Biochemistry
Mahé et al.

Parasites dominate hyperdiverse soil protist communities in Neotropical rainforests

Nature Ecology & Evolution
2016
Singer et al.

High-throughput sequencing reveals diverse oomycete communities in oligotrophic peat bog micro habitat

Fungal Ecology
Schiaffino et al.

Microbial eukaryote communities from Patagonian Antarctic gradient of lakes evidence of a biogeographical pattern

Environmental microbiology
Blandenier et al.

Mycamoeba gemmipara nov. gen., nov. sp., the First Cultured Member of the Environmental Dermamoebidae Clade LKM74 and its Unusual Life Cycle

Journal of Eukaryotic Microbiology
2015
Singer et al.

Eight species in the Nebela collaris complex: Nebela gimlii Arcellinida,Hyalospheniidae), a new species described from a Swiss raised bog

European Journal of Protistology
Lara et al.

Planktonic eukaryote molecular diversity: discrimination of minerotrophic and ombrotrophic peatland pools in Tierra del Fuego (Argentina)

Journal of Plankton Research
Seppey et al.

Response of forest soil euglyphid testate amoebae (Rhizaria: Cercozoa) to pig cadavers assessed by high-throughput sequencing

International Journal of Legal Medicine
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